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Text File  |  1990-10-25  |  6KB  |  164 lines
  1. ! sequence loops from loopDloop !
  2. ! written Tuesday, January 2, 1990 !
  3.  
  4. !%version 0.8d54 !
  5. !%format  garyolsen !
  6. !%loopcalc arc !
  7.  
  8. A<0.15,16.00|{1}AAUUGAAGAGUUUGA>U(<1.11,1.35|C(A(U(<-2.83,6.52|{20}
  9.     GGCUCAG(A(U(U(
  10.       GA(A(C(G(C(U(
  11.         GG(C({40}G(G(C(A(G(G(C(<0.00,-0.99|>
  12.           C<0.06,-3.50|UAA>C(<-1.58,0.00|A(C(
  13.             AU(G(C(
  14.               AA{60}GUCGAACGGU{70}AAC(A(G(G(A(A(G(A({80}A(G(
  15.                 CUUG)C)U)U)C)U)U)U
  16.               G)C)U)G
  17.             ACG{100}AGUGGCGGACGGG(<-0.89,12.03|U(G(<-2.52,-4.00|<-0.04,-4.83|
  18.               AGUAA{120}U>G(<-1.75,-0.09|U(C(U(G(G(G(
  19.                 AAA(C(
  20.                   UGCC(U(G(A(U({140}G(G(<1.25,-1.22|
  21.                     A>G(<0.08,-1.50|
  22.                       GG(G(
  23.                         GA(U(
  24.                           AAC(U(A(C(U(G(
  25.                             GA{160}AA)C)G)G)U)A)G
  26.                           CUA)A)U
  27.                         A)C)C
  28.                       G>)C
  29.                     AU{180}AACG(<-1.67,-0.08|U(C(
  30.                       GCAA)G)A>)C<-0.93,5.80|
  31.                     CAAAG(<-0.17,1.75|A(G({200}G(G(G(
  32.                       GAC(C(
  33.                         UUCG)G)G)C)C)U)C)U>)U<1.63,0.93|
  34.                       G{220}>>)C)C)A)U)C)G)G
  35.                     AU)G)U
  36.                   G)C)C)C)A)G)A>)U>G({240}G(G(A(U(U(
  37.                 AG(C(U(
  38.                   AGU(A(G(G(U(G(G(G(
  39.                     G{260}UAACGG)C)U)C)A)C)C)U)A)G)G)C
  40.                   GAC{280})G)A)U)C)C)C
  41.                 UAG(<-0.21,1.82|C(U(G(G(U(C(U(
  42.                   GAGA{300})G)G)A
  43.                 UGA)C)C)A)G>)C<1.13,-0.07|>)C)A)C
  44.               AC(U(G(G(A({320}
  45.                 AC(
  46.                   UGAGACAC)G
  47.                 G)U)C)C)A)G
  48.               AC(U({340}C(C(
  49.                 UACG)G)G)A)G
  50.               GCA>)G)C)A)G)U>)G<-0.82,-0.07|>
  51.             G{360}GGAAUAU<-0.06,1.17|>U(<-0.16,1.82|G(C(A(
  52.               CAAU(G(G(G(C(
  53.                 G{380}CAA)G)C)C)U)G
  54.               A)U)G)C>)A<1.29,0.37|>)G)C)C
  55.             A)U)G)C{400})C)G)C<1.29,1.48|<-0.71,3.17|<-3.62,-0.08|
  56.           GU>G(<-0.11,1.67|U(A(U(<-5.33,-0.08|
  57.             GAAGAA>G(<0.08,1.75|G(C(C(
  58.               U{420}UCG)G)G)U>)U
  59.             GUAAA)G)U)A>)CU(U(U(C({440}
  60.           AG(C(G(G(G(
  61.             GA(G(
  62.               GAAGGG(A(G(U(A(A({460}A(G(
  63.                 UUAAUAC)C)U)U)U)G)C)U)C
  64.               AUU{480}GACG)U)U
  65.             A)C)C)C)G)C
  66.           A)G)A)A)G
  67.         AA>G({500}C(A(C(C(
  68.           GGCUAAC(U(C(C(G(U(G(
  69.             CCA{520}GCAGCCGCGGUAA)U)A)C)G)G)A)G{540})G)G)U)G)C<0.54,-1.90|
  70.           A>>)A)G)C)G)U)U)A)A)U)C
  71.         GGAA{560}UUA>C(<4.23,-0.09|U(G(G(G(C(G(<2.57,1.43|<0.37,9.08|<-3.03,5.99|
  72.           UAAAG>C(<1.40,1.15|G(C(A(C({580}
  73.             GCAG(G(C(G(G(<-0.05,1.64|U(U(U(G(U(U(A(
  74.               AG(U(C(A({600}G(A(U(G(U(G(
  75.                 AAAUCC(C(C(G(G(G(
  76.                   CUC{620}AA)C)C)U)G)G)G
  77.                 AAC)U)G)C)A)U)C)U)G)A{640})U
  78.               AC)U)G)G)C)A)A)G>)C<2.27,0.12|
  79.             UUGA(<1.83,0.09|G(U(C(U(C({660}G(U(
  80.               AGAG(G(G(G(G(G(U(A(G(
  81.                 AA(U(U(C(C({680}A(G(G(U(
  82.                   GUAG(C(G(
  83.                     GUGAAA)U)G)C
  84.                   G{700}UAGAG)A)U)C)U)G)G)A)G)G
  85.                 A)A)U<5.98,0.29|<1.32,-0.02|>
  86.               ACC{720}GGU>GGCGAAGGCG<-1.10,0.24|>)G)C)C)C)C)C)U{740}
  87.             GG)A)C)G
  88.           A)A)G)A)C>)U<-0.28,-2.94|
  89.         GA>>)C)G)C)U
  90.       CAG{760})G)U)G)C>)G
  91.     AAA>G(<1.70,0.02|C(G(U(G(G(G(
  92.       GAGCA{780}AAC(A(G(G(
  93.         AUUAGAUAC)C)C)U)G
  94.       G{800}UAG)U)C)C)A)C)G>)C
  95.     CGUAAACGAU{820}>G(U(C(G(A(C(U(U(<2.02,-0.70|G(G(A(G(G(U(U(G(U(G(C(C({840}
  96.       CUUGA)G)G)C)G)U)G)G)C)U)U)C>)CG(<-1.69,-0.19|G(
  97.     A{860}G(C(
  98.       UAAC)G)C
  99.     G)U)U>)A)A)G)U)C)G)A)C)C{880})G)C)C)U)G)G
  100.   G>G(A(G(U(
  101.     ACG(G(C(C(
  102.       GCA{900}A)G)G)U)U
  103.     AAA)A)C)U)C
  104.   AA)A)U)G>)A<8.32,-0.14|
  105.  AU{920}UGACG>G(<0.00,-2.17|G(G(G(C(C(C(G(<5.20,-0.07|
  106.   CACA>A(<1.11,-1.56|G(C({940}G(G(U(<2.40,1.88|
  107.     GG>A(<1.75,-0.08|G(C(A(U(G(U(G(G(U(<0.24,4.03|
  108.       UUAAU({960}U(C(G(
  109.         AUGCAACG)C)G)A)A
  110.       GAACC{980}UUA>C(<1.75,-0.08|C(U(G(G(U(C(<0.11,3.23|<-2.48,1.27|
  111.         UUGACA>U(<1.08,1.50|C(C(A({1000}C(G(G(<-0.93,2.50|
  112.           AAG(U(U(U(U(C(A(
  113.             GAGA)U)G)A)G{1020})A)A)U
  114.           G>U(G(C(C(U(U()C)G)G)G)A)A)C)C)G)U{1040})G
  115.             A)G>)A
  116.           C>A(<1.90,-0.04|G(G(
  117.             UG(C(U(G(
  118.               CA(U(G(G(C(U({1060}G(
  119.                 UC(G(U(C(A(<-0.03,2.00|G(C(U(C(G(<-1.67,0.08|U(G(U(U(
  120.                   GUGA{1080})A)A)U)G>)U<-0.05,1.67|>U(<1.50,0.06|G(G(G(
  121.                 UUAAGU)C)C)C<-0.59,-0.83|>>)G<2.08,-0.32|
  122.               C{1100}AAC>)G)A)G>)C
  123.             GCAACC(<-1.96,-1.91|C(U(U(A(U(C(C({1120}U(U(U(G(
  124.               UU(
  125.                 GC(C(
  126.                   AGC(G(G(
  127.                     UCCGG)C{1140})C)G)G)G
  128.                   A)A
  129.                 CU)C)A)A)A)G)G)A<-1.03,0.01|
  130.               GACUG{1160}C(C(A(G(U(
  131.                 GAUAA)A)C)U)G)G
  132.               AGGAA{1180}GG>)U)G)G)G)G
  133.             A>)U)G)A)C)G
  134.           U)C
  135.         A)A)G)U)C{1200})A)U
  136.       CA)U)G)G)C)C)C>)U
  137.     UAC)G)A)C)C)A)G{1220}>)G
  138.   GCU)A)C
  139.  A)C)A)C)G)U)G)C>)U<3.92,-0.17|
  140.  ACA>A(<1.17,-1.25|U({1240}G(G(C(G(C(A(U(
  141.  ACAAAGAGAAGCG{1260}ACC(U(C(
  142.   GCGA)G)A)G
  143.  CAAGCGGA{1280}CCUCAUAAA)G)U)G)C)G)U)C)G>)U
  144.  AG{1300}UCCGGAUU(G(G({1310}A(G(U(C(
  145.  UGCAAC{1320}UC)G)A)C)U)C)C)A
  146.  U{1330}GAAGUCGGA)A{1340})U)C)G)C>)U
  147.  AGUAA(U(C(G(U(G(G(
  148.  AUCA{1360}GAAUG)C)C)A)C)G{1370})G)U
  149.  GAAUACGU{1380}UCC)C)G)G)G)C)C)U>)U<-2.50,-2.25|
  150.  GUA>C<0.08,-14.33|ACACC{1400}GCCCGUCA>C[<1.83,-0.00|A[C[C[
  151.  AU[G[G[
  152.  GAG[U[{1420}G[G[G[U[U[G[C[A[A[A[
  153.  AGAAG[U[A[G[G[U[{1440}
  154.   AG[C[U[U[
  155.     AAC[C[
  156.       UUCG]G]G
  157.     A]G]G]G]C{1460}]G]C]U]U]A]C
  158.   CAC]U]U]U]G]U]G]A]U]U]C]A{1480}]U
  159.  GA]C]U]G
  160.  G]G]G]U>)G<3.41,-0.21|
  161.  AAGUCG>U<-0.32,-23.08|AA{1500}CAAGGU(A(A(C(C(G(U(A(G(G(
  162.  GGAA)C{1520})C)U)G)C)G)G)U)U)G
  163.  GAUCACCUCCU{1540}U>A
  164.