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Hacker Chronicles 2
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HACKER2.BIN
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545.DMDISP.TXT
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1988-04-27
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14KB
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170 lines
In this section you can establish or edit the coordinates according to 1 I01 000
which the circular plasmid map will be drawn. Although limited notes 1 I01 000
are added among the data tables below, reference to the program manual 1 I01 000
is recommended. 1 I01 000
1 I01 000
For information concerning how to move around, press <F1>. 1 I01 000
1 I01 000
To exit, press <ESC>. 1 I01 000
1 I01 000
1 I01 000
1 I01 000
1 I01 000
1 I01 000
1 I01 000
FILENAME 2 I01 000
┌────────────┐ 3 I01 000
│ │ 9 E01 000
└────────────┘ 3 I02 000
1 I02 000
1 I02 000
PLASMID NAME 2 I02 000
┌────────────────────┐ 3 I02 000
│ │ 9 E02 000
└────────────────────┘ 3 I03 000
1 I03 000
1 I03 000
SIZE FORM 2 I03 000
┌──────┐ ┌────────┐ 3 I03 000
│ │ │circular│ 9 E03 000
└──────┘ └────────┘ 3 I04 000
Change with C or L 1 I04 000
1 I04 000
1 I04 000
LINE TYPES OF THE PLASMID CIRCLE 2 I04 000
no thickness lines pen 2 I04 000
┌──┬─────────┬─────┬────┐ 3 I04 000
│ 1│ 0.000 │ 1 │ 1 │ single 9 E04 000
│ 2│ 0.020 │ 3 │ 1 │ heavy 9 E04 000
│ 3│ 0.030 │ 2 │ 1 │ double 9 E04 000
│ 4│ 0.100 │ 2 │ 1 │ broad double 9 E04 000
│ 5│ 0.000 │ 0 │ 0 │ user defined 9 E04 000
\│ 6│ 0.000 │ 0 │ 0 │ user defined 9 E04 005
└──┴─────────┴─────┴────┘ 3 I05 000
In the table below, reference is made to these line types. 1 I05 000
1 I05 000
1 I05 000
COMPOSITION OF THE PLASMID CIRCLE 2 I05 000
from to type 2 I05 000
┌───────┬───────┬──┐ 3 I05 000
│ 0 │ 1000 │ 1│ 9 E05 000
│ │ │ │ 9 E05 000
\│ │ │ │ 9 E05 002
└───────┴───────┴──┘ 3 I06 000
To add arrows to the line borders, press > or < for the forward and 1 I06 000
the backward arrow. At contradiction, the arrow at the thicker line 1 I06 000
dominates. CTRL-A removes an arrowhead. 1 I06 000
Overlapping definitions are allowed here and the latest definition 1 I06 000
overrides the others. To compose the overlaps, exit the cursor from 1 I06 000
the table. 1 I06 000
1 I06 000
1 I06 000
1 I06 000
GENES 2 I06 000
from to D name 2 I06 000
┌───────┬───────┬─┬──────────────────────────────┐ 3 I06 000
│ │ │ │ │ 9 E06 000
\│ │ │ │ │ 9 E06 001
└───────┴───────┴─┴──────────────────────────────┘ 3 I07 000
Enter the genes in a clockwise direction irrespective of 1 007 000
their actual direction. 1 007 000
To add arrowheads to the ends of the genes, press > or < 1 I07 000
while staying in the coordinate box. CTRL-A removes an 1 I07 000
arrowhead. 1 I07 000
The D-box shows the direction of the gene name 1 I07 000
on the map. It is calculated as you exit the line if the 1 I07 000
D-box is empty. You can edit also the D-box. 1 I07 000
1 I07 000
1 I07 000
SITES 2 I07 000
coordinate name type 2 I07 000
┌──────┬────────────────────┬──────┐ 3 I07 000
│ │ │ │ 9 E07 000
\ │ │ │ │ 9 E07 001
└──────┴────────────────────┴──────┘ 3 I08 000
If the name box is left empty, the previous name is 1 I08 000
copied in the box. 1 I08 000
CTRL-T changes the site type (enzyme, by default). 1 I08 000
1 I08 000
1 I08 000
SUPPRESSION LIST 2 I08 000
status component 2 I08 000
┌──────────┐ 3 I08 000
│ active │ Draw a box around the map 9 E08 000
│ active │ Write the plasmid name 9 E08 000
│ active │ Write the plasmid size 9 E08 000
│ active │ Write the site coordinates 9 E08 000
│ active │ Write the site names 9 E08 000
│ active │ Draw the site marks 9 E08 000
│ active │ Write the gene names 9 E08 000
│ active │ Draw the gene arcs 9 E08 000
│suppressed│ Draw a box around the comments 9 E08 000
│ active │ Write the comments 9 E08 000
└──────────┘ 3 I09 000
Change status by CTRL-S 1 I09 000
1 I09 000
1 I09 000
PICTURE COMPONENTS 2 I09 000
current default 2 I09 000
value value component 2 I09 000
┌───────┬───────┐ 3 I09 000
│ │ 0.090 │ sites: character size (y-comp) 9 E09 000
│ │ 1.00 │ character shape (x/y ratio) 9 E09 000
│ │ 0.070 │ genes: character size (y-comp) 9 E09 000
│ │ 1.00 │ character shape (x/y ratio) 9 E09 000
│ │ 0.150 │ name: character size (y-comp) 9 E09 000
│ │ 0.67 │ character shape (x/y ratio) 9 E09 000
│ │ 0.20 │ length of the site mark 9 E09 000
│ │ 1 │ number of blanks after the longest enzyme name 9 E09 000
│ │ 0.80 │ distance of the gene arcs from center 9 E09 000
│ │ 50 │ angle of the gene arrows 9 E09 000
│ │ 80 │ angle of the block arrows on the plasmid 9 E09 000
│ │ 1.00 │ magnification (max ) 9 E09 000
└───────┴───────┘ 3 I10 000
Press CTRL-D to retain the default value. 1 I10 000
1 I10 000
1 I10 000
COMMENTS 2 I10 000
┌────────────────────────────────────────────────────────────────────────┐3 I10 000
│ │9 E10 000
│ │9 E10 000
│ │9 E10 000
│ │9 E10 000
│ │9 E10 000
│ University of Helsinki │9 E10 000
│ Department of Genetics │9 E10 000
│ Arkadiankatu 7 │9 E10 000
│ SF-OO1OO Helsinki │9 E10 000
│ FINLAND │9 E10 000
│ │9 E10 010
└────────────────────────────────────────────────────────────────────────┘3 I11 000
1 I11 000
1 I11 000
1 I11 000
1 I11 000
1 I11 000
1 I11 000
1 I11 000
1 I11 000
1 I11 000
1 I11 000
----END
THE USED PART OF THIS FILE ENDED TWO LINES AGO.
THE FILE IS AN IMAGE OF THE DISPLAY FOR EDITING MAP COORDINATES
FOR THE DRAWMAP PROGRAM.
THE STRUCTURE OF THIS FILE IS:
CHARACTER
1 \ MEANS THAT THE LINE IS NOT SHOWN ON SCREEN
1-75 CONTAINS THE TEXT FOR THE SCREEN
76 GIVES THE COLOR OF THE LINE
77 EMPTY
78-80 TELLS WHAT PART OF THE DISPLAY THE LINE BELONGS TO
-E MEANS ACTUAL DATA LINE
-I MEANS COMMENT LINE
81 EMPTY
82-84 NONZERO AFTER A LINE WHICH CAN BE REPEATED ACCORDING TO
A PROGRAM PARAMETER. TELLS THE PROGRAM HOW MANY LINES
HAVE ALREADY BEEN USED IN THE BLOCK.
